Shopify Plus + Axonaut

Manage clients and cashflow more efficiently with Axonaut by connecting Shopify Plus to unify data flows, automate operations, and support complex commerce environments at scale.

Import Shopify Orders to Axonaut Invoices

Stock updates from Axonaut to Shopify

Seamless automation with Shopify Plus

Shopify Plus to Axonaut workflows

Connect Axonaut with Shopify Plus to automate workflows, synchronize data in real-time, and enhance efficiency across your business processes.

Support enterprise commerce growth with Shopify Plus by integrating Axonaut to streamline CRM, quotes, invoicing, cashflow, and day-to-day business operations.

Axonaut is an all-in-one business management platform for small businesses that combines CRM, quotes, invoicing, cashflow, project management, and administrative workflows in a single interface. It is especially relevant to teams that want a practical tool for both commercial follow-up and operational management.

Integration guide

How Shopify Plus and Axonaut work together

Why?

The Shopify + Axonaut integration connects your Shopify store with Axonaut so your ecommerce sales and stock information can move between both systems automatically.

Target

It is designed for merchants who sell online with Shopify and use Axonaut for invoicing, CRM or accounting. Instead of exporting orders from Shopify and recreating invoices by hand, the integration helps keep your sales records aligned in Axonaut.

Benefits

It can also use Axonaut as the central stock management tool and update Shopify inventory when stock changes in Axonaut, helping reduce manual corrections and prevent overselling.

Data flows

What moves between the apps

Primary sync path

Shopify is the source of truth for ecommerce orders. Paid Shopify orders can be imported into Axonaut as invoices every 15 minutes, checking the last 3 hours of orders. Manual import is available for testing, backfills or support investigations.

Axonaut is the source of truth for stock in this integration. When stock information changes in Axonaut, Shopify inventory can be updated in near real time so the online store reflects the latest available quantities.

Product matching is important in both directions. Shopify order lines and Axonaut products should use consistent product references, especially SKUs, so invoices and stock updates can be matched correctly.

Workflows

Automated workflows

Automated workflow

Import Shopify Orders to Axonaut Invoices

DIRECTION Shopify → Axonaut

DATA orders → invoices

This workflow imports Shopify orders into Axonaut as invoices. It is intended for paid Shopify orders and helps finance teams keep Axonaut up to date without manually recreating ecommerce sales.

TRIGGER

scheduled every 15 minutes, checking the last 3 hours of orders; manual import is available

Automated workflow

Stock updates from Axonaut to Shopify

DIRECTION Axonaut → Shopify

This workflow updates Shopify inventory levels using stock information from Axonaut products. It is useful when Axonaut is your central place for stock receipts, adjustments or other inventory movements.

TRIGGER

webhook, running in near real time when stock information changes in Axonaut

Use cases

When to use this connector

You want Shopify sales to become Axonaut invoices automatically.
You use Axonaut for invoicing, bookkeeping preparation, VAT follow-up or sales visibility.
You want to reduce manual exports and month-end data entry from Shopify.
You want to test or backfill orders before enabling a fully automated routine.
You manage stock primarily in Axonaut and sell through Shopify.
You want Shopify inventory to reflect stock changes made in Axonaut.
You want to reduce overselling caused by outdated Shopify quantities.
You want to avoid manual stock corrections in Shopify.

FAQ

Common questions

How often are Shopify orders imported into Axonaut?

The order import runs every 15 minutes and checks the last 3 hours of Shopify orders. Manual import is also available for testing, backfills or support checks.

Why was a Shopify order not imported?

Check whether the order matches the configured payment, order and fulfillment filters. By default, the workflow imports paid, open orders and accepts any fulfillment status.

What happens if a Shopify product cannot be matched in Axonaut?

The invoice may not be created correctly until the product reference is fixed. Make sure Shopify products and variants have reliable SKUs and that matching products exist in Axonaut.

Can invoices be marked as paid automatically in Axonaut?

Yes, this can be enabled with the payment setting. For a new integration, it is safer to keep invoices unpaid at first, confirm the invoice output, then enable automatic payment recording later.

How quickly are stock changes sent from Axonaut to Shopify?

Stock updates are handled in near real time when Axonaut sends stock information to Synchron.

Why was Shopify stock not updated?

The Shopify product or variant must be matched to the Axonaut product, and the configured Shopify location must be the correct one for the stock being updated.

Ready to connect Shopify Plus and Axonaut?

Tell us which workflows you need, and we’ll help you confirm the right setup.

Unified Commerce Suite for Shopify Plus

E-commerce features

Unify Shopify Plus and Axonaut with scheduled and event-driven synchronization of orders, fulfilments, inventory, invoices, refunds and more.

Monitor transactions via an intuitive dashboard, access actionable analytics, and enable manual retries to streamline operations between Axonaut and Shopify Plus.

View all features